Wheat genome structure and function : Genome sequence data and the international wheat genome sequencing consortium
Identifieur interne : 009247 ( Main/Exploration ); précédent : 009246; suivant : 009248Wheat genome structure and function : Genome sequence data and the international wheat genome sequencing consortium
Auteurs : P. Moolhuijzen [Australie] ; D. S. Dunn [Australie] ; M. Bellgard [Australie] ; M. Carter [Australie] ; J. Jia [République populaire de Chine] ; X. Kong [République populaire de Chine] ; B. S. Gill [États-Unis] ; C. Feuillet [France] ; J. Breen [Australie] ; R. Appels [Australie]Source :
- Australian journal of agricultural research [ 0004-9409 ] ; 2007.
Descripteurs français
- Pascal (Inist)
English descriptors
- KwdEn :
Abstract
Genome sequencing and the associated bioinformatics is now a widely accepted research tool for accelerating genetic research and the analysis of genome structure and function of wheat because it leverages similar work from other crops and plants. The International Wheat Genome Sequencing Consortium addresses the challenge of wheat genome structure and function and builds on the research efforts of Professor Bob McIntosh in the genetics of wheat. Currently, expressed sequence tags (ESTs; ∼500000 to date) are the largest sequence resource for wheat genome analyses. It is estimated that the gene coverage of the wheat EST collection is ∼60%, close to that ofArabidopsis, indicating that ∼40% of wheat genes are not represented in EST collections. The physical map of the D-genome donor species Aegilops tauschii is under construction (http://wheat.pw.usda.gov/PhysicalMapping). The technologies developed in this analysis of the D genome provide a good model for the approach to the entire wheat genome, namely compiling BAC contigs, assigning these BAC contigs to addresses in a high resolution genetic map, filling in gaps to obtain the entire physical length of a chromosome, and then large-scale sequencing.
Affiliations:
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Moolhuijzen</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Centre for Comparative Genomics, Murdoch Universit y</s1><s2>Murdoch, WA 6150</s2><s3>AUS</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>9 aut.</sZ><sZ>10 aut.</sZ></inist:fA14><country>Australie</country><wicri:noRegion>Murdoch, WA 6150</wicri:noRegion></affiliation></author><author><name sortKey="Dunn, D S" sort="Dunn, D S" uniqKey="Dunn D" first="D. S." last="Dunn">D. S. Dunn</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Centre for Comparative Genomics, Murdoch Universit y</s1><s2>Murdoch, WA 6150</s2><s3>AUS</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>9 aut.</sZ><sZ>10 aut.</sZ></inist:fA14><country>Australie</country><wicri:noRegion>Murdoch, WA 6150</wicri:noRegion></affiliation></author><author><name sortKey="Bellgard, M" sort="Bellgard, M" uniqKey="Bellgard M" first="M." last="Bellgard">M. Bellgard</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Centre for Comparative Genomics, Murdoch Universit y</s1><s2>Murdoch, WA 6150</s2><s3>AUS</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>9 aut.</sZ><sZ>10 aut.</sZ></inist:fA14><country>Australie</country><wicri:noRegion>Murdoch, WA 6150</wicri:noRegion></affiliation></author><author><name sortKey="Carter, M" sort="Carter, M" uniqKey="Carter M" first="M." last="Carter">M. Carter</name><affiliation wicri:level="1"><inist:fA14 i1="02"><s1>State Agric Biotechnology Centre, Murdoch University</s1><s2>Murdoch, WA 6150</s2><s3>AUS</s3><sZ>4 aut.</sZ></inist:fA14><country>Australie</country><wicri:noRegion>Murdoch, WA 6150</wicri:noRegion></affiliation></author><author><name sortKey="Jia, J" sort="Jia, J" uniqKey="Jia J" first="J." last="Jia">J. Jia</name><affiliation wicri:level="3"><inist:fA14 i1="03"><s1>Institute of Crop Sciences, Chinese Academy of Agricultural Sciences</s1><s2>100081, Beijing</s2><s3>CHN</s3><sZ>5 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>République populaire de Chine</country><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Kong, X" sort="Kong, X" uniqKey="Kong X" first="X." last="Kong">X. Kong</name><affiliation wicri:level="3"><inist:fA14 i1="03"><s1>Institute of Crop Sciences, Chinese Academy of Agricultural Sciences</s1><s2>100081, Beijing</s2><s3>CHN</s3><sZ>5 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>République populaire de Chine</country><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Gill, B S" sort="Gill, B S" uniqKey="Gill B" first="B. S." last="Gill">B. S. Gill</name><affiliation wicri:level="1"><inist:fA14 i1="04"><s1>Department of Plant Pathology, Kansas State University</s1><s2>Manhattan, KS 66506</s2><s3>USA</s3><sZ>7 aut.</sZ></inist:fA14><country>États-Unis</country><wicri:noRegion>Manhattan, KS 66506</wicri:noRegion></affiliation></author><author><name sortKey="Feuillet, C" sort="Feuillet, C" uniqKey="Feuillet C" first="C." last="Feuillet">C. Feuillet</name><affiliation wicri:level="1"><inist:fA14 i1="05"><s1>UMR ASP 1095, INRA, University Blaise Pascal</s1><s2>63100 Clermont-Ferrand</s2><s3>FRA</s3><sZ>8 aut.</sZ></inist:fA14><country>France</country><wicri:noRegion>63100 Clermont-Ferrand</wicri:noRegion><wicri:noRegion>University Blaise Pascal</wicri:noRegion><wicri:noRegion>63100 Clermont-Ferrand</wicri:noRegion></affiliation></author><author><name sortKey="Breen, J" sort="Breen, J" uniqKey="Breen J" first="J." last="Breen">J. Breen</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Centre for Comparative Genomics, Murdoch Universit y</s1><s2>Murdoch, WA 6150</s2><s3>AUS</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>9 aut.</sZ><sZ>10 aut.</sZ></inist:fA14><country>Australie</country><wicri:noRegion>Murdoch, WA 6150</wicri:noRegion></affiliation></author><author><name sortKey="Appels, R" sort="Appels, R" uniqKey="Appels R" first="R." last="Appels">R. Appels</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Centre for Comparative Genomics, Murdoch Universit y</s1><s2>Murdoch, WA 6150</s2><s3>AUS</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>9 aut.</sZ><sZ>10 aut.</sZ></inist:fA14><country>Australie</country><wicri:noRegion>Murdoch, WA 6150</wicri:noRegion></affiliation></author></analytic><series><title level="j" type="main">Australian journal of agricultural research</title><title level="j" type="abbreviated">Aust. j. agric. res.</title><idno type="ISSN">0004-9409</idno><imprint><date when="2007">2007</date></imprint></series></biblStruct></sourceDesc><seriesStmt><title level="j" type="main">Australian journal of agricultural research</title><title level="j" type="abbreviated">Aust. j. agric. res.</title><idno type="ISSN">0004-9409</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Agriculture</term><term>Data</term><term>Genome</term><term>Genome organization</term><term>International</term><term>Sequencing</term><term>Structure function relationship</term><term>Triticum</term></keywords><keywords scheme="Pascal" xml:lang="fr"><term>Organisation génome</term><term>Relation structure fonction</term><term>Génome</term><term>Donnée</term><term>International</term><term>Séquençage</term><term>Agriculture</term><term>Triticum</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Genome sequencing and the associated bioinformatics is now a widely accepted research tool for accelerating genetic research and the analysis of genome structure and function of wheat because it leverages similar work from other crops and plants. The International Wheat Genome Sequencing Consortium addresses the challenge of wheat genome structure and function and builds on the research efforts of Professor Bob McIntosh in the genetics of wheat. Currently, expressed sequence tags (ESTs; ∼500000 to date) are the largest sequence resource for wheat genome analyses. It is estimated that the gene coverage of the wheat EST collection is ∼60%, close to that ofArabidopsis, indicating that ∼40% of wheat genes are not represented in EST collections. The physical map of the D-genome donor species Aegilops tauschii is under construction (http://wheat.pw.usda.gov/PhysicalMapping). The technologies developed in this analysis of the D genome provide a good model for the approach to the entire wheat genome, namely compiling BAC contigs, assigning these BAC contigs to addresses in a high resolution genetic map, filling in gaps to obtain the entire physical length of a chromosome, and then large-scale sequencing.</div></front></TEI><affiliations><list><country><li>Australie</li><li>France</li><li>République populaire de Chine</li><li>États-Unis</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="Australie"><noRegion><name sortKey="Moolhuijzen, P" sort="Moolhuijzen, P" uniqKey="Moolhuijzen P" first="P." last="Moolhuijzen">P. Moolhuijzen</name></noRegion><name sortKey="Appels, R" sort="Appels, R" uniqKey="Appels R" first="R." last="Appels">R. Appels</name><name sortKey="Bellgard, M" sort="Bellgard, M" uniqKey="Bellgard M" first="M." last="Bellgard">M. Bellgard</name><name sortKey="Breen, J" sort="Breen, J" uniqKey="Breen J" first="J." last="Breen">J. Breen</name><name sortKey="Carter, M" sort="Carter, M" uniqKey="Carter M" first="M." last="Carter">M. Carter</name><name sortKey="Dunn, D S" sort="Dunn, D S" uniqKey="Dunn D" first="D. S." last="Dunn">D. S. Dunn</name></country><country name="République populaire de Chine"><noRegion><name sortKey="Jia, J" sort="Jia, J" uniqKey="Jia J" first="J." last="Jia">J. Jia</name></noRegion><name sortKey="Kong, X" sort="Kong, X" uniqKey="Kong X" first="X." last="Kong">X. Kong</name></country><country name="États-Unis"><noRegion><name sortKey="Gill, B S" sort="Gill, B S" uniqKey="Gill B" first="B. S." last="Gill">B. S. Gill</name></noRegion></country><country name="France"><noRegion><name sortKey="Feuillet, C" sort="Feuillet, C" uniqKey="Feuillet C" first="C." last="Feuillet">C. Feuillet</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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